PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P02180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 316aa    MW: 35243.9 Da    PI: 8.381
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P02180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.8e-32144200258
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                            dDgy+WrKYGqK++k+s++prsYYrC+ ++C +kk+vers edp+++++tYeg H h
  GSMUA_Achr8P02180_001 144 DDGYKWRKYGQKSIKNSPNPRSYYRCSNPRCGAKKQVERSMEDPEMLIVTYEGLHLH 200
                            8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-30137200IPR003657WRKY domain
SuperFamilySSF1182905.36E-27138200IPR003657WRKY domain
PROSITE profilePS5081127.221138200IPR003657WRKY domain
SMARTSM007742.6E-37143202IPR003657WRKY domain
PfamPF031063.2E-26144200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEDTYKVTGP HLPLSHSFPL PSTPLLMEAI EDAEANRFDD LDHYHRIMRE LREEKSLRFI  60
SPEAAESKRD ARHESVVNKL IAAVYSGPTI GDVESALTLT TFPNGDAGGR CSSRSTVCPP  120
DKGQGKMEHK YTLRLKTCRI GFADDGYKWR KYGQKSIKNS PNPRSYYRCS NPRCGAKKQV  180
ERSMEDPEML IVTYEGLHLH CTYSHLLLPP PREDSKAGFH ASKKLKRRSM AGAPDNTTIQ  240
PRLPSQPAVD GTVSPVLEED ALRSSEGLLE DVVPLVVRKP CISTTSSYDR RPSSYSNPSW  300
TNSSSCFNLG ILSTTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-211372001174Probable WRKY transcription factor 4
2lex_A3e-211372001174Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412593.20.0PREDICTED: probable WRKY transcription factor 49
TrEMBLM0TLX00.0M0TLX0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P02180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-41WRKY DNA-binding protein 49