PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 370aa    MW: 41634 Da    PI: 5.3322
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17152201155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ +++g
  GSMUA_Achr8P01980_001 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTADAAARAYDRAAIRFRG 201
                            78*******************......55***********************9997 PP
2AP244.53.8e-14244294155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k++g
  GSMUA_Achr8P01980_001 244 SKYRGVTLHK-CGRWEARMGQV--L-GKKYIYLGLFDSEIEAARAYDKAAIKYNG 294
                            89********.7******4442..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-16152210IPR016177DNA-binding domain
PfamPF008472.0E-9152201IPR001471AP2/ERF domain
PROSITE profilePS5103217.899153209IPR001471AP2/ERF domain
CDDcd000181.98E-11153211No hitNo description
SMARTSM003809.1E-32153215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17153210IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-17244303IPR016177DNA-binding domain
PfamPF008471.9E-9244294IPR001471AP2/ERF domain
CDDcd000183.85E-25244304No hitNo description
SMARTSM003806.4E-31245308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-16245302IPR001471AP2/ERF domain
PROSITE profilePS5103215.923245302IPR001471AP2/ERF domain
PRINTSPR003671.7E-6246257IPR001471AP2/ERF domain
PRINTSPR003671.7E-6284304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGKRSNRIED EFLGGAMLDL NLASSSEHSG AGQVDDSRSS NSSGLNAEVM VDVIDEDYCS  60
TQPAAAFEFS ILKSCTSGEG GNEVEEENED DRRQPGLVTR QLFPPPPVVP HVSQLPMQQQ  120
QQQLQPQQQQ QQQPQPQQQV KRSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTADAAAR AYDRAAIRFR GVDADINFNL SDYEEDLKEM KNLPKEEFVH ALRRQSTGFS  240
RGSSKYRGVT LHKCGRWEAR MGQVLGKKYI YLGLFDSEIE AARAYDKAAI KYNGKEAVTN  300
FDPSTYEEEL LLEGDKEVQC SELLAGHDMD LNLRISQPAV HNQRGNQNPT CVQFEASDAD  360
KASITHLPYP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412613.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AMA91e-104AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB51e-104AP22_ORYSJ; APETALA2-like protein 2
TrEMBLM0TLV00.0M0TLV0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01980_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-90AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]