PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 307aa    MW: 33528.4 Da    PI: 5.8313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.7e-27151211259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgy+WrKYGqK++ +s+fprsYYrCt++   gC++kk+v+r + dp ++e+tY g+H+++
  GSMUA_Achr8P01730_001 151 DDGYTWRKYGQKDILNSRFPRSYYRCTHKnyyGCEAKKQVQRLDADPYTLEVTYCGSHTCK 211
                            8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27140211IPR003657WRKY domain
SuperFamilySSF1182903.4E-25148212IPR003657WRKY domain
SMARTSM007741.5E-36150212IPR003657WRKY domain
PROSITE profilePS5081121.195151213IPR003657WRKY domain
PfamPF031063.2E-25151211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDEVLSQVFG ACRLAGELES SLRLSNAAAD AHFLLSSCEH IVDAFNKAID GVRMLTGEGR  60
MRPFELPPIP AAEDDEHPFF EMADFSESPQ LSLEVQPSAA AHSEAFAGGG EAQVAVGGAS  120
SRGRSSRKRK EGYVTKKVPV LRTGNMEVPP DDGYTWRKYG QKDILNSRFP RSYYRCTHKN  180
YYGCEAKKQV QRLDADPYTL EVTYCGSHTC KTSPTPIMIP SLAHSPIGKD EKDDRTCHGH  240
PQAAPTTTLS TSIQLGNWFE GSSRQEGQTQ GGRDVDYCPV AEFADAMFSS GSSGSIMDAI  300
YLPRQGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20151211969OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412987.20.0PREDICTED: WRKY transcription factor 55-like
TrEMBLM0TLS50.0M0TLS5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-39WRKY DNA-binding protein 55