PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P01440_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 25458.7 Da PI: 4.6128 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.00011 | 213 | 234 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cgk F++ L+ H + H GSMUA_Achr8P01440_001 213 CKSCGKKFNSDNGLQAHTKAkH 234 *****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 12.009 | 211 | 238 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 213 | 234 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MLICLALCKH ILAAIDFLDL DFDCWPTFPD FDESDSDADE DIQLEHIVNG KTNVKDEQPK 60 STAGKPNVAS AKVKPKVAEL KKADKQKANK EDDEDDEESE EDESDDDEDT AKADAEDDSE 120 DEDESSDEDE ATVKKAEPSN KRPAGSALKT PVSEKKAKLR VSQGSGGSQK KGGAGKNDGQ 180 PATPNPAKRS GKTPATNDKS KQQTPKSAGS INCKSCGKKF NSDNGLQAHT KAKHGGAK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412671.1 | 1e-142 | PREDICTED: histone deacetylase HDT1-like isoform X1 | ||||
TrEMBL | M0TLP6 | 1e-168 | M0TLP6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P01440_001 | 1e-168 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2204 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 6e-13 | histone deacetylase 2C |