PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 263aa    MW: 28944.5 Da    PI: 6.8928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  GSMUA_Achr8P01400_001 14 KGPWTPEEDIVLVSYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding50.84e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GSMUA_Achr8P01400_001  67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ARTDNDIKNYWNTHL 112
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.941961IPR017930Myb domain
SuperFamilySSF466896.6E-3011108IPR009057Homeodomain-like
SMARTSM007171.4E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-241568IPR009057Homeodomain-like
CDDcd001675.70E-111661No hitNo description
PROSITE profilePS5129425.07762116IPR017930Myb domain
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2469116IPR009057Homeodomain-like
CDDcd001676.64E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRPPCCDKD GVKKGPWTPE EDIVLVSYIQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPART DNDIKNYWNT HLKKKLEGGA  120
DCQKSSGRQQ SYRSISKGHS ITRPSVYASS TENISRLLEG WGIAPASSAS SQGSASTSRC  180
ITSSLEPLES LFGLGDSARE SSSEPPFSLL ESWLLDVESV GNGQESFLDV AIDGTGEIKS  240
PMFVSPKFQE INTIDCPNFL LTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-27141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light) (PubMed:16005291, PubMed:21637967). Promotes guard cell deflation in response to water deficit. Triggers root growth upon osmotic stress (e.g. mannitol containing medium) (PubMed:21637967). {ECO:0000269|PubMed:16005291, ECO:0000269|PubMed:21637967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonic acid (JA) and salicylic acid (SA) (PubMed:16463103). Triggered by auxin (IAA) in roots (PubMed:9839469, PubMed:21637967). Stimulated by light, UV-light and cold (PubMed:9839469). According to PubMed:16005291 and PubMed:23828545, rapidly repressed by abscisic acid (ABA) in an ABI1-dependent manner. But in contrast, according to PubMed:21637967, transiently induced by ABA in seedlings (PubMed:16005291, PubMed:21637967, PubMed:23828545). Rapidly repressed by drought. Activated by white light, but repressed by blue light and darkness (PubMed:16005291). Transiently induced by salt (NaCl) in seedlings. Induced by sucrose (PubMed:21637967). Positively regulated by SCAP1 (PubMed:23453954). {ECO:0000269|PubMed:16005291, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:21637967, ECO:0000269|PubMed:23453954, ECO:0000269|PubMed:23828545, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412676.11e-156PREDICTED: myb-related protein 306-like
SwissprotQ8GYP57e-90MYB60_ARATH; Transcription factor MYB60
TrEMBLM0TLP20.0M0TLP2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.16e-91myb domain protein 60
Publications ? help Back to Top
  1. Galbiati M, et al.
    Gene trap lines identify Arabidopsis genes expressed in stomatal guard cells.
    Plant J., 2008. 53(5): p. 750-62
    [PMID:18036199]
  2. Rusconi F, et al.
    The Arabidopsis thaliana MYB60 promoter provides a tool for the spatio-temporal control of gene expression in stomatal guard cells.
    J. Exp. Bot., 2013. 64(11): p. 3361-71
    [PMID:23828545]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kim D,Ntui VO,Xiong L
    Arabidopsis YAK1 regulates abscisic acid response and drought resistance.
    FEBS Lett., 2016. 590(14): p. 2201-9
    [PMID:27264339]