PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P00510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 320aa    MW: 36036.8 Da    PI: 4.8093
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P00510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix668e-2124104175
               trihelix   1 rWtkqevlaLiearremeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                            rWt++e+++L+ea+r  e r r     r+++ +++We+vs+++r++g+ r+  qC+++w+nl+ ++kk++++e+++ ++  
  GSMUA_Achr8P00510_001  24 RWTRREIMVLVEAKRAAEGRGRgargpRSAAGETKWEWVSAYCRRKGVDRGMLQCRKRWSNLACDFKKVRAWEGGEgAAAG 104
                            8**************99999996544456799*****************************************98633333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0512486IPR017877Myb-like domain
PfamPF138371.5E-1124110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MADGVNGGGG GDGGSASRPH RLPRWTRREI MVLVEAKRAA EGRGRGARGP RSAAGETKWE  60
WVSAYCRRKG VDRGMLQCRK RWSNLACDFK KVRAWEGGEG AAAGESFWAM RNDCRRDRRL  120
PGFFDKEVFD ILNRTVLNEL EAEEEEEEAE VKVRDGGEGE NEKEEDEVEV EEEEAVFDSG  180
RTAADNGLFS DCEYENGMGG QERLPPPIAV TPISERKFEP FQQEFSDPGI INDRQPANDH  240
ETQSSQGLKR RRISPEEGSS NFDNQLIKII ERNNKMIVSH FNAQNANLQL ERDQRREQAN  300
SLLDVLNKLV DAVGRIADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248252KRRRI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413005.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLM0TLF30.0M0TLF3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P00510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-54Trihelix family protein