PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P27480_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRF

Protein Properties

Length: 607aa MW: 65554.4 Da PI: 8.0446

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P27480_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	228	272	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e GSMUA_Achr7P27480_001 228 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 272 79****************************************986 PP
2	QLQ	59.3	1.2e-20	158	194	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy++a++P+Pp+Ll +i++ GSMUA_Achr7P27480_001 158 GPFTPSQWLELEHQALIYKYIVAKVPIPPNLLTPIRR 194 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.0E-12	158	194	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.6E-15	159	193	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.741	159	194	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	228	272	IPR014977	WRC domain
Pfam	PF08879	2.2E-20	229	271	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MDFGGVVSMD GFVGASSGGG SLLSCSLTTS NAQVCRPKGL PGCGFQKLGR SAEPDDCDWR 60 SLKMARTEAM VTAPNEAPPF LPGSTTTPYS LFPYGEQMLS FSSTSKQDAL MLSCEGALPY 120 YCSPSASSPT PSSYLRSAGL YSGSSDVNIN GVLARVRGPF TPSQWLELEH QALIYKYIVA 180 KVPIPPNLLT PIRRSLSSSG FHPLSAGPFG SNSLGWGPFY LGYSGNADPE PGRCRRTDGK 240 KWRCSRDAVA DQKYCERHMN RGRHRSRKHV EGQSGHAAKA MPVIAASQSA TAVSGAGSSS 300 SLGSAHPQTK TLQPNVREVC TAPFNMMVMN KENANDQRQD PVSLSMLTSM NPKPTSSLFS 360 IPEHHNAFET TSFRADLQLV ATDSHLNPAT RSFSDKSCIA SPKLQVPRPQ SHPLHHFIDD 420 WSKTQSNRST ITWPEIEEMQ FERTQLSMSI PVASSEFSSS SSPHHENLTL SPLKLSREYN 480 LPHMDSRINV LSEVNQRQIS WIPISWETSM AGPLGEALAN TSSMPKDQSK NCSSSSSLNL 540 LTDGWDSSPR MESSPTGVLQ KTSFGSLTSS TGSNPRAENR KAHESTASLS DDLLGPTLVG 600 PPTIPSL

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MDFGGVVSMD GFVGASSGGG SLLSCSLTTS NAQVCRPKGL PGCGFQKLGR SAEPDDCDWR  60
SLKMARTEAM VTAPNEAPPF LPGSTTTPYS LFPYGEQMLS FSSTSKQDAL MLSCEGALPY  120
YCSPSASSPT PSSYLRSAGL YSGSSDVNIN GVLARVRGPF TPSQWLELEH QALIYKYIVA  180
KVPIPPNLLT PIRRSLSSSG FHPLSAGPFG SNSLGWGPFY LGYSGNADPE PGRCRRTDGK  240
KWRCSRDAVA DQKYCERHMN RGRHRSRKHV EGQSGHAAKA MPVIAASQSA TAVSGAGSSS  300
SLGSAHPQTK TLQPNVREVC TAPFNMMVMN KENANDQRQD PVSLSMLTSM NPKPTSSLFS  360
IPEHHNAFET TSFRADLQLV ATDSHLNPAT RSFSDKSCIA SPKLQVPRPQ SHPLHHFIDD  420
WSKTQSNRST ITWPEIEEMQ FERTQLSMSI PVASSEFSSS SSPHHENLTL SPLKLSREYN  480
LPHMDSRINV LSEVNQRQIS WIPISWETSM AGPLGEALAN TSSMPKDQSK NCSSSSSLNL  540
LTDGWDSSPR MESSPTGVLQ KTSFGSLTSS TGSNPRAENR KAHESTASLS DDLLGPTLVG  600
PPTIPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376067	1e-43	AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04.
GenBank	BT063759	1e-43	BT063759.1 Zea mays full-length cDNA clone ZM_BFc0104G18 mRNA, complete cds.
GenBank	BT064538	1e-43	BT064538.1 Zea mays full-length cDNA clone ZM_BFc0179B15 mRNA, complete cds.
GenBank	BT067085	1e-43	BT067085.1 Zea mays full-length cDNA clone ZM_BFb0185D09 mRNA, complete cds.
GenBank	BT088016	1e-43	BT088016.1 Zea mays full-length cDNA clone ZM_BFb0357C16 mRNA, complete cds.
GenBank	EU969909	1e-43	EU969909.1 Zea mays clone 337118 growth-regulating factor 1 mRNA, complete cds.
GenBank	EU973647	1e-43	EU973647.1 Zea mays clone 403513 growth-regulating factor 1 mRNA, complete cds.
GenBank	KJ726877	1e-43	KJ726877.1 Zea mays clone pUT3418 GRF transcription factor (GRF1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411325.1	0.0	PREDICTED: growth-regulating factor 6-like isoform X1
Swissprot	Q6AWY3	1e-131	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	M0TL84	0.0	M0TL84_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P27480_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-65	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]