PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P26450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 478aa    MW: 51496.4 Da    PI: 8.0761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P26450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32225281259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +DgynWrKYGqK+vkgse+prsYY+Ct ++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  GSMUA_Achr7P26450_001 225 HDGYNWRKYGQKVVKGSEYPRSYYKCTNPNCPVKKKVERSV-DGQVTEIIYKGQHNHQ 281
                            7****************************************.***************8 PP
2WRKY107.37.8e-34399457159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDg++WrKYGqK+vkg+++prsYY+Ct+agC+v+k++ers +dpk+v++tYeg+Hnh+
  GSMUA_Achr7P26450_001 399 LDDGFRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERSPTDPKAVITTYEGKHNHD 457
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-29212283IPR003657WRKY domain
SuperFamilySSF1182901.44E-25222283IPR003657WRKY domain
SMARTSM007749.8E-36224282IPR003657WRKY domain
PROSITE profilePS5081124.306226283IPR003657WRKY domain
PfamPF031061.0E-24226281IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36385459IPR003657WRKY domain
SuperFamilySSF1182902.48E-29391459IPR003657WRKY domain
PROSITE profilePS5081137.505394459IPR003657WRKY domain
SMARTSM007741.1E-39399458IPR003657WRKY domain
PfamPF031064.4E-26400457IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MKEENGGGGG GETVREGDAA APVAPRAGAP PRPTITLPPR FALESLFHCG GGGAGASEVS  60
PGPLTLVSSF FADDPESECR SFTQLLVGAM NSPSGGGLVL LGQNRPPSLA ISQPQYFTVP  120
PGLSPASLLD SPAFFSSGLG NFAMSHQEVL AQVTAQAAQS QFRMSSQAEF PSPFLTTAAT  180
TSSPQQLIPK IPTLKPIDTV LESAEGFQSD QRSQPTTTIV DKPVHDGYNW RKYGQKVVKG  240
SEYPRSYYKC TNPNCPVKKK VERSVDGQVT EIIYKGQHNH QCPLPNKRAK EGGSLPSRSH  300
ETNGNLDNPN LGSLDHDGNF GKLNNIKVVP ITRKDQESGY ETPEQISGST DGEEVADVKA  360
DVGDDGEREP KRRNMAASSQ KTLTEPRIIV QTRSEVDLLD DGFRWRKYGQ KVVKGNPHPR  420
SYYKCTFAGC NVRKHIERSP TDPKAVITTY EGKHNHDVPA ARKSSHDTVT SGAAFKNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38216460878Probable WRKY transcription factor 4
2lex_A1e-38216460878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411083.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-139WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM0TKY10.0M0TKY1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P26450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-131WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]