PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P26260_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 22322.3 Da PI: 4.9707 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.3 | 3.7e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++C+l+p++ p++q++++ +v+k+FG++ ++++++ +p+++r+++++sl++eA+ r+ +Pv+Gavg+++++ GSMUA_Achr7P26260_001 2 SCNGCRVLRKGCSDSCFLRPCLqwidfPEAQAHATVFVAKFFGRAGLMSFISGVPPSQRPALFKSLLFEACGRTINPVNGAVGLMWTG 89 6********************999999************************************************************* PP DUF260 84 qqqleqlkaelall 97 +++l+q+++e++l+ GSMUA_Achr7P26260_001 90 NWHLCQAAVETVLR 103 ********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.155 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDSCFLR PCLQWIDFPE AQAHATVFVA KFFGRAGLMS FISGVPPSQR 60 PALFKSLLFE ACGRTINPVN GAVGLMWTGN WHLCQAAVET VLRGGTLSTL PGLAAEDHSD 120 DAPPESDGLC SPPLMGFSSS AAERWKVPAP YDAAAALSCD LDLCLTPSPG DGSEEKRSWR 180 PATPSINSEG SVTTSGGGDG STAEPRLLNL FV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411060.1 | 1e-153 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9FN11 | 8e-65 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | M0TKW2 | 1e-152 | M0TKW2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P26260_001 | 1e-153 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-66 | LOB domain-containing protein 39 |
Publications ? help Back to Top | |||
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