PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 233aa    MW: 24807.4 Da    PI: 7.5951
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20110144135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  GSMUA_Achr7P25620_001 110 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 144
                            ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-18104156IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.969107140IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-14107148No hitNo description
Gene3DG3DSA:3.30.50.102.6E-17108144IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.23E-13109141No hitNo description
PfamPF003205.2E-18110144IPR000679Zinc finger, GATA-type
PROSITE patternPS003440110135IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLHQCGHQCS AYPCSCGFVY SGCGGGGASF SFLFPIAGKH SVDEDFDATH STSSSPSLVD  60
CTLSLGTPST RQTESKPSAS FNQIQRTSCI GGDANGSSLG GDPLLLARRC ANCDTTSTPL  120
WRNGPRGPKS LCNACGIRYK KEERRAAASS VPPSSSPSVT AAAGDQGIGY GYHRQQQSPW  180
SCYASSTMKT NSSIAMYDEM ADHGEAPYLS WQFNVAPSPQ FPVRDRPSLF QYN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410977.11e-157PREDICTED: GATA transcription factor 19-like
SwissprotQ9ZPX01e-31GAT20_ARATH; GATA transcription factor 20
TrEMBLM0TKP81e-171M0TKP8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P25620_0011e-172(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.13e-31GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]