PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 347aa    MW: 36803.9 Da    PI: 9.2433
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.4e-32146200459
            ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                            ++YkeCl+NhAa+lGgh+vDGCgEfmps g+  t++alkCaACgCHR+FHRre++ 
  GSMUA_Achr7P25600_001 146 TKYKECLRNHAAALGGHVVDGCGEFMPS-GDPDTPEALKCAACGCHRSFHRRETDG 200
                            68*************************9.5557********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.5E-30146198IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-18147199IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.6E-29147197IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.61148197IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.93E-18255319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28256322IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-26260316IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEFRNPGEIG IPASSSSSSG YKPSLVRGGS AFSKPTLFPS TSFVSPRGEG DAGGAGVGSG  60
GVGRGGARNG NILGNTEALP PPTLESTPTA IDRLPQSLGK NADQAAISNS SPGAAGVGLF  120
ADNSKPTTIA KTSTITAATG AAYISTKYKE CLRNHAAALG GHVVDGCGEF MPSGDPDTPE  180
ALKCAACGCH RSFHRRETDG SAGTANSYYH GTTRLPLLLP PPHPQAHPYH QQHGSGGTTT  240
ESSSEERLNT ATPTPTTIPR KRSRTKFTAE QKENMLAFAE RVGWRFQRQD DAMVEQFCAE  300
IGVRRQVLKV WMHNNKHTAV RKQQQLQPPP PEEQPVQQPQ SAQRLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-272613191876ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411228.10.0PREDICTED: zinc-finger homeodomain protein 5-like
TrEMBLM0TKP60.0M0TKP6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P25600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-55homeobox protein 22