PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 326aa    MW: 35693.5 Da    PI: 6.3731
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.2e-34187245159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers++dp++v++tYeg+Hnh+
  GSMUA_Achr7P25400_001 187 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSHQDPTIVITTYEGKHNHQ 245
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-36172247IPR003657WRKY domain
SuperFamilySSF1182909.02E-30179247IPR003657WRKY domain
PROSITE profilePS5081132.891182247IPR003657WRKY domain
SMARTSM007747.3E-39187246IPR003657WRKY domain
PfamPF031065.4E-27188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAGDQGREHY HFLLHDELSA LFSQKPPGGA ADPGPRGFHL QAVSPLLSFT DLLHGPAMDY  60
DSLGRDLGLS CSAPSGVVGS GGTASRELMT GGNDNARYGC GGGATPLTPN SSVSSSSTEA  120
AGEEDGERCK KDQLKQEDEE EEEEQQAKDD DDGGDTSKKV NKTKKKGEKR QRQPRFAFVT  180
KSEVDHLDDG YRWRKYGQKA VKNSPYPRSY YRCTTQKCPV KKRVERSHQD PTIVITTYEG  240
KHNHQNPATA RGSTHLIASL PMMSTSFCQE LMMHQIPQLN SIDTQQGNTN PNVFLASLLP  300
SLQQSHFPDY GLLQDIVPSL VDGSQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-291802481078Probable WRKY transcription factor 4
2lex_A2e-291802481078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410946.20.0PREDICTED: probable WRKY transcription factor 71
TrEMBLM0TKM60.0M0TKM6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P25400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-50WRKY DNA-binding protein 71