PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 522aa    MW: 56853.8 Da    PI: 6.5405
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.34.9e-3333106273
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec 73 
                            +g+kdrhsk++T++g RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+q+ak+ai++l+++s  ++   +c
  GSMUA_Achr7P25320_001  33 TGRKDRHSKVYTAKGVRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLMQNAKTAIDQLADLSRRHQpvDRC 106
                            79*************************************************************95554433344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-303398IPR005333Transcription factor, TCP
PROSITE profilePS5136931.2833593IPR017887Transcription factor TCP subgroup
SuperFamilySSF578504.59E-20389454No hitNo description
Gene3DG3DSA:3.30.40.101.7E-19404451IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.81E-12405449No hitNo description
PfamPF136399.5E-13405448IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.327406448IPR001841Zinc finger, RING-type
SMARTSM001844.2E-7406447IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEEGNRDCYK QHCQRRCTGE LIEVPGGHIV RSTGRKDRHS KVYTAKGVRD RRVRLAAHTA  60
IQFYDVQDRL GYDRPSKAVD WLMQNAKTAI DQLADLSRRH QPVDRCVVHE LPLQDTSVGH  120
DSIELPMSDA GAVASVGYGF GGSSGSLIPP SLDGDAIDDL VKPFPTVTAT ASSPSSHGMT  180
YHDYTPDLLL HACGRPQDLR LSLQSFHDPT FRDHHHQSPE STQHFFCSGT TNLAHATTWA  240
TLVNATPVGS VYSDFPDSRI LTVQREELDS RTHTKATIDH PQPKNTMSYA PPAGGNGNGI  300
GPPDYPSEDG HSIRTSILST VLVLLALVMA VIVFVRLYVR YVFTNRFPGD DRRRRRLAAI  360
DFLRFHMAAD AVPQAVGLDP SAIAALPAFA YQMATGGEDE GSVAECAVCL STVEEGEMVR  420
LLPTCKHLFH AGCIDMWLAS HVTCPVCRAM VEPPEAAAID VGETSAPQPS RAEGTSAEET  480
SGSKEGSSVS SRLSASLRRM LSRETSTSRR SQGVAAEDLE RQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-214093154Putative transcription factor PCF6
5zkt_B7e-214093154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0TKL80.0M0TKL8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P25320_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-44TCP family protein