PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P25060_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32574.4 Da PI: 7.1145 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l ++++G+g +W t +++ g++R++k+c++rw++yl GSMUA_Achr7P25060_001 14 RGPWSPEEDAVLRSHIEEYGTGgNWITLPKKAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.9e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + ++lG++ W+ Ia+++ gRt++++k++w++ GSMUA_Achr7P25060_001 69 GGFTEEEDNIICSLYRKLGSR-WSVIASHLR-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.362 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.18E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.676 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.17E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGRAPCCDKA TVKRGPWSPE EDAVLRSHIE EYGTGGNWIT LPKKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC SLYRKLGSRW SVIASHLRGR TDNDVKNYWN TKLKKKLMTP 120 TIITSNIPSP TPASLLPTVK AEPYNNPSDI SRSVDSIFAL TQDSHEFYSE PSPLPRECRA 180 KETGQLHRHS PSEEVSATSS TFTVDDGSRN SYGNWSASGA GPHDLFLSEL DIEYLTDLLG 240 DDGCQAECSE VMKLAWPGRA RAEAKERENT PVACLSESAV YGPRKQNRNE NQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 119 | 7 | 110 | B-MYB |
1h8a_C | 2e-24 | 12 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411220.1 | 0.0 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | M0TKJ2 | 0.0 | M0TKJ2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P25060_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 3e-70 | MYB family protein |