PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr7P24790_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 209aa MW: 23897.4 Da PI: 10.1838 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.6 | 4.8e-34 | 18 | 110 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F+ k+ye+++d++++ li+w + +nsfvv+++++f++ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+h+ F +g GSMUA_Achr7P24790_001 18 FVAKTYEMVNDPRTDCLIRWGKGNNSFVVVNPSDFSQFLLPSYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHHLFLRG 96 9****************************************************************999.........*********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 + +ll ++ r++++ GSMUA_Achr7P24790_001 97 QIHLLPHVIRRSKK 110 *******9999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.2E-37 | 12 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.6E-50 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.39E-33 | 15 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.8E-29 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-18 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-18 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-18 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MEEIRNTSVG YQVQASPFVA KTYEMVNDPR TDCLIRWGKG NNSFVVVNPS DFSQFLLPSY 60 FKHSNFSSFV RQLNTYGFRK VDPDRWEFAH HLFLRGQIHL LPHVIRRSKK SHVGLCAGSS 120 SSSITRRVRV QKQQRQPPSP SLYSATDSAS LYELKVYCQT SSCFCILGRY CSFLIANLLS 180 SPLSSKIVYF IDINFKNLQT AKSLSMTRT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-22 | 18 | 107 | 20 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY332465 | 4e-32 | AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds. | |||
GenBank | AY344486 | 4e-32 | AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds. | |||
GenBank | AY998118 | 4e-32 | AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410872.1 | 3e-89 | PREDICTED: heat stress transcription factor C-1b-like | ||||
TrEMBL | M0TKG5 | 1e-154 | M0TKG5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P24790_001 | 1e-154 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-46 | heat shock transcription factor C1 |