PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P23980_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 169aa MW: 19339.4 Da PI: 10.9709 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 6.9e-30 | 88 | 146 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K++k+s++pr+YY C+s+gC+vkk+ver++ed ++v++tYeg Hnh+ GSMUA_Achr7P23980_001 88 LDDGYSWRKYGKKMMKNSQNPRNYYHCSSEGCNVKKRVERESEDSRFVITTYEGIHNHR 146 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.8E-32 | 74 | 148 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 81 | 148 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.826 | 83 | 148 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-33 | 88 | 147 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-23 | 89 | 146 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSCCLLLSIR LRRQMTMMST KTSPSITSKY RGDLSFCSSV SRFILTVRVC VPLLVCRNGN 60 KAKGSVTGRS SSMRTRVAFR TKSEIEKLDD GYSWRKYGKK MMKNSQNPRN YYHCSSEGCN 120 VKKRVERESE DSRFVITTYE GIHNHRAPLP AIPTPHPTIG RPHPRSFSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-23 | 78 | 148 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-23 | 78 | 148 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018684481.1 | 2e-80 | PREDICTED: probable WRKY transcription factor 43 | ||||
TrEMBL | M0TK84 | 1e-121 | M0TK84_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P23980_001 | 1e-122 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-34 | WRKY DNA-binding protein 50 |