PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P23980_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 169aa    MW: 19339.4 Da    PI: 10.9709
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P23980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.66.9e-3088146159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYG+K++k+s++pr+YY C+s+gC+vkk+ver++ed ++v++tYeg Hnh+
  GSMUA_Achr7P23980_001  88 LDDGYSWRKYGKKMMKNSQNPRNYYHCSSEGCNVKKRVERESEDSRFVITTYEGIHNHR 146
                            59********************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-3274148IPR003657WRKY domain
SuperFamilySSF1182901.83E-2681148IPR003657WRKY domain
PROSITE profilePS5081129.82683148IPR003657WRKY domain
SMARTSM007748.5E-3388147IPR003657WRKY domain
PfamPF031063.4E-2389146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSCCLLLSIR LRRQMTMMST KTSPSITSKY RGDLSFCSSV SRFILTVRVC VPLLVCRNGN  60
KAKGSVTGRS SSMRTRVAFR TKSEIEKLDD GYSWRKYGKK MMKNSQNPRN YYHCSSEGCN  120
VKKRVERESE DSRFVITTYE GIHNHRAPLP AIPTPHPTIG RPHPRSFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2378148777Probable WRKY transcription factor 4
2lex_A1e-2378148777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684481.12e-80PREDICTED: probable WRKY transcription factor 43
TrEMBLM0TK841e-121M0TK84_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P23980_0011e-122(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-34WRKY DNA-binding protein 50