PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P23330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 408aa    MW: 45729.1 Da    PI: 4.3524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P23330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16e-5261331128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGfrFhPtd elv++yLk+kv gk+++  e+i+ev++yk+ Pw+Lp+  ++++++ ewyfF++rdkky++g+r+nrat+ gyWkat
  GSMUA_Achr7P23330_001   6 LPPGFRFHPTDVELVWYYLKRKVMGKPFRS-EAISEVELYKFAPWELPEksRLRTRDLEWYFFCHRDKKYSNGSRSNRATDGGYWKAT 92 
                            79**************************99.89**************95246666777****************************** PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkdk+v++ ++ +vg+++tLvf++g+ pkg++t+Wvm eyrl
  GSMUA_Achr7P23330_001  93 GKDKSVIH-NSCTVGMRRTLVFHEGKPPKGTRTNWVMYEYRL 133
                            ********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-613156IPR003441NAC domain
PROSITE profilePS5100557.0646156IPR003441NAC domain
PfamPF023653.1E-277133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAKTNLPPGF RFHPTDVELV WYYLKRKVMG KPFRSEAISE VELYKFAPWE LPEKSRLRTR  60
DLEWYFFCHR DKKYSNGSRS NRATDGGYWK ATGKDKSVIH NSCTVGMRRT LVFHEGKPPK  120
GTRTNWVMYE YRLQSRELVD AGFAQDAYLL CKVFQKSGLG PRIGEQYGAP FNEEDWEDDT  180
AIESSFPLPC VSSCLSAEPL DNQAIQADPV SKQPIASSAV ELLSDHDLLD VDGISLEELA  240
EFLNSSPLVE NADGKMPDLT IPSMNVNEAA AMDPEGVYNE LDDLSTGELI SGNIDLIENI  300
LNETALCPTL QELDSKQYVE LNDLIGDGNP YVSVEPSTPF APNPSGHWPD LENLNHILDP  360
IPYFDNDVYG GMHGLPHTGP DTTSQHWLPG MQIGDFGEFV PPLERSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-46115615168NAC domain-containing protein 19
3swm_B2e-46115615168NAC domain-containing protein 19
3swm_C2e-46115615168NAC domain-containing protein 19
3swm_D2e-46115615168NAC domain-containing protein 19
3swp_A2e-46115615168NAC domain-containing protein 19
3swp_B2e-46115615168NAC domain-containing protein 19
3swp_C2e-46115615168NAC domain-containing protein 19
3swp_D2e-46115615168NAC domain-containing protein 19
3ulx_A2e-46215711169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410688.10.0PREDICTED: NAC domain-containing protein 82-like isoform X2
TrEMBLM0TK190.0M0TK19_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P23330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-81NAC domain containing protein 2