PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P22020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 227aa MW: 25337.1 Da PI: 5.8789 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.1 | 5.4e-21 | 70 | 132 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 +Dgy+WrKYGqK+++++ +pr YY+Ct++ gCp++k v++++ dp ++ + Y+ +H+++ GSMUA_Achr7P22020_001 70 EDGYQWRKYGQKTINDAMYPRCYYKCTYRddqGCPATKTVQQQDsyADPPTFMVEYSMKHTCK 132 7***************************99999*******9875226**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-23 | 56 | 134 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-21 | 64 | 134 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-31 | 69 | 133 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-23 | 70 | 132 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.797 | 70 | 134 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAKQILQLTT SALSTLQFCG CGASDDGGTG NCSGELSKSS EGRDGPHGRR TSCRRKNKTS 60 TKVKTTVPYE DGYQWRKYGQ KTINDAMYPR CYYKCTYRDD QGCPATKTVQ QQDSYADPPT 120 FMVEYSMKHT CKTPQTIFPV LMVESSPQKA SLHGSDSTGS SDLQDLHLSP PSSVVTHSES 180 HDKCSSSNEQ EQPCQHEGLI TVNTLDELDM ESMDLFMRNF DGWFYVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-12 | 70 | 132 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411190.1 | 1e-168 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | M0TJN8 | 1e-170 | M0TJN8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P22020_001 | 1e-171 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66600.1 | 3e-18 | ABA overly sensitive mutant 3 |