PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P21780_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 34147.3 Da PI: 6.1685 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.8 | 7.4e-52 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yL++k++ ++ + +i+e+d+yk++Pw+Lp k +++ewyfF++rd+ky++g+r+nr++ +gyWkatg GSMUA_Achr7P21780_001 13 LPPGFRFHPTDEELVVHYLCRKIACQRPAV-PIIAEIDLYKYDPWELPDKSLFGQREWYFFTPRDRKYPNGSRPNRSAGKGYWKATGA 99 79*************************888.88***************7767789********************************* PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ k ++++vg+kk Lvfy+g+ap+g ktdW+mheyrl GSMUA_Achr7P21780_001 100 DKPISPKgSNRTVGIKKALVFYSGKAPRGLKTDWIMHEYRL 140 *****9867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-62 | 10 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.899 | 13 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-27 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGRKRDAEAE LNLPPGFRFH PTDEELVVHY LCRKIACQRP AVPIIAEIDL YKYDPWELPD 60 KSLFGQREWY FFTPRDRKYP NGSRPNRSAG KGYWKATGAD KPISPKGSNR TVGIKKALVF 120 YSGKAPRGLK TDWIMHEYRL ADTNRKSNKG SLRLDDWVLC RLYNKKNTWE KMQQQQKEET 180 SFGLTMDSLD DTGSDSFRTP ESDVENDDVL PDFDDLGYPS QASTGGQALS TSRAVGLQMV 240 EKIEKEDEWF MDLKLDDLQS SFMGFGSTPS MDATNQDYYF QSFAPPMHRP SGTNMLPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-96 | 1 | 171 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR078315 | 0.0 | KR078315.1 Musa ABB Group cultivar Karibale Monthan NAC domain containing transcription factor NAC68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410478.1 | 0.0 | PREDICTED: NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-111 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | M0TJL4 | 0.0 | M0TJL4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P21780_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-89 | NAC family protein |