PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P21770_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 22579.7 Da PI: 9.5559 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.1 | 1.5e-52 | 8 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+ +yL +++++ ++++ ++i+evdiyk++Pw+Lp+k++ ++ ewyfFs+r++ky++g r+nra++sgyWkatg GSMUA_Achr7P21770_001 8 LPPGFRFHPTDEELILHYLGNRAASLPCPV-SIIAEVDIYKFDPWELPAKATFGDGEWYFFSPRERKYPNGYRPNRAAASGYWKATGI 94 79****************************.89***************98888999******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v+++ +++ +g+kk Lvfykgr pkg+kt+W+mheyrl GSMUA_Achr7P21770_001 95 DKPVVTSsGNSYIGVKKALVFYKGRPPKGVKTNWIMHEYRL 135 ****99856677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-64 | 5 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.881 | 8 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-26 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSSAGMLLPP GFRFHPTDEE LILHYLGNRA ASLPCPVSII AEVDIYKFDP WELPAKATFG 60 DGEWYFFSPR ERKYPNGYRP NRAAASGYWK ATGIDKPVVT SSGNSYIGVK KALVFYKGRP 120 PKGVKTNWIM HEYRLAEPPS KNSYKPIELR DLSMKLDDWV LCRIYKRNSS SSQSSAVEDQ 180 SSPSQPEAPM VHKPHTHTSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-73 | 8 | 173 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-73 | 8 | 173 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-73 | 8 | 173 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-73 | 8 | 173 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-73 | 8 | 173 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-73 | 8 | 173 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-73 | 8 | 173 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-73 | 8 | 173 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-73 | 8 | 173 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-73 | 8 | 173 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-73 | 8 | 173 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-73 | 8 | 173 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-73 | 8 | 173 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-73 | 8 | 173 | 17 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM663482 | 1e-44 | KM663482.1 Ananas bracteatus clone 47906b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410477.1 | 1e-125 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | Q8GY42 | 5e-83 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | M0TJL3 | 1e-147 | M0TJL3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P21770_001 | 1e-148 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-83 | NAC domain containing protein 25 |