PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P21770_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 200aa    MW: 22579.7 Da    PI: 9.5559
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P21770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.5e-5281351128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+ +yL +++++ ++++ ++i+evdiyk++Pw+Lp+k++ ++ ewyfFs+r++ky++g r+nra++sgyWkatg 
  GSMUA_Achr7P21770_001   8 LPPGFRFHPTDEELILHYLGNRAASLPCPV-SIIAEVDIYKFDPWELPAKATFGDGEWYFFSPRERKYPNGYRPNRAAASGYWKATGI 94 
                            79****************************.89***************98888999******************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+v+++ +++ +g+kk Lvfykgr pkg+kt+W+mheyrl
  GSMUA_Achr7P21770_001  95 DKPVVTSsGNSYIGVKKALVFYKGRPPKGVKTNWIMHEYRL 135
                            ****99856677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-645167IPR003441NAC domain
PROSITE profilePS5100560.8818167IPR003441NAC domain
PfamPF023651.9E-269135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSSAGMLLPP GFRFHPTDEE LILHYLGNRA ASLPCPVSII AEVDIYKFDP WELPAKATFG  60
DGEWYFFSPR ERKYPNGYRP NRAAASGYWK ATGIDKPVVT SSGNSYIGVK KALVFYKGRP  120
PKGVKTNWIM HEYRLAEPPS KNSYKPIELR DLSMKLDDWV LCRIYKRNSS SSQSSAVEDQ  180
SSPSQPEAPM VHKPHTHTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-73817317171NO APICAL MERISTEM PROTEIN
1ut4_B3e-73817317171NO APICAL MERISTEM PROTEIN
1ut7_A3e-73817317171NO APICAL MERISTEM PROTEIN
1ut7_B3e-73817317171NO APICAL MERISTEM PROTEIN
3swm_A4e-73817320174NAC domain-containing protein 19
3swm_B4e-73817320174NAC domain-containing protein 19
3swm_C4e-73817320174NAC domain-containing protein 19
3swm_D4e-73817320174NAC domain-containing protein 19
3swp_A4e-73817320174NAC domain-containing protein 19
3swp_B4e-73817320174NAC domain-containing protein 19
3swp_C4e-73817320174NAC domain-containing protein 19
3swp_D4e-73817320174NAC domain-containing protein 19
4dul_A3e-73817317171NAC domain-containing protein 19
4dul_B3e-73817317171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6634821e-44KM663482.1 Ananas bracteatus clone 47906b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410477.11e-125PREDICTED: NAC transcription factor 29-like
SwissprotQ8GY425e-83NAC25_ARATH; NAC transcription factor 25
TrEMBLM0TJL31e-147M0TJL3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P21770_0011e-148(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-83NAC domain containing protein 25