PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P21550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 132aa    MW: 14898.1 Da    PI: 9.1684
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P21550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-184188148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT  Ed +lv++vk++G g+W+++ +  g+ R++k+c++rw ++l
  GSMUA_Achr7P21550_001 41 KGPWTSAEDAILVEYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 88
                           79******************************************9996 PP
2Myb_DNA-binding25.43.3e-0894131140
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                            +g+++ eE+e +v+++++ G++ W++ a  +   ++ +++
  GSMUA_Achr7P21550_001  94 KGAFSMEEEEMIVQLHAKIGNK-WAKMATFVS-ELSSYHL 131
                            799*******************.********9.9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.2473692IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-233791IPR009057Homeodomain-like
SMARTSM007175.6E-154090IPR001005SANT/Myb domain
PfamPF002499.0E-164188IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-2542118IPR009057Homeodomain-like
CDDcd001676.01E-114388No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1292123IPR009057Homeodomain-like
PROSITE profilePS512948.15593132IPR017930Myb domain
SMARTSM007171993128IPR001005SANT/Myb domain
PfamPF002498.4E-694124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MNLLPTKSEK EPIAEDNIFS HSIDEGSREK SIGKDGQVLK KGPWTSAEDA ILVEYVKKHG  60
EGNWNAVQKN SGLFRCGKSC RLRWANHLKP NLKKGAFSME EEEMIVQLHA KIGNKWAKMA  120
TFVSELSSYH LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-203912325108MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684371.17e-83PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_018684372.14e-83PREDICTED: transcription factor GAMYB-like isoform X2
SwissprotA2WW879e-50GAM1_ORYSI; Transcription factor GAMYB
TrEMBLM0TJJ15e-93M0TJJ1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P21550_0018e-94(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.15e-49myb domain protein 33