PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P21370_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 294aa MW: 33684.6 Da PI: 4.6149

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P21370_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	1e-08	61	152	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...........................................TTS-STCHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas........................................kapskKlsKaeiLekAveY 50 r+h e+ErrRR+ri+s +++Lr++l ++ ++ +Ka+ L k+ve GSMUA_Achr7P21370_001 61 RNHREAERRRRERIKSHLDRLRTILACDPkvsslvswttfpllqlqedittkaslgmltffwifpfldfCIDQIPTDKASLLAKVVER 148 78************************96669999999999999888888888888888888888888865455558888888888888 PP HHHH CS HLH 51 IksL 54 +k+L GSMUA_Achr7P21370_001 149 MKDL 152 8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.128	58	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.91E-8	61	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-7	61	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-9	62	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-4	64	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-9	129	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.91E-8	130	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MPAGRAGRSD LQAEMLSGLP EYFMASFYPH MEMEMEMETE MAMRDEAVDA TRMDRALVAS 60 RNHREAERRR RERIKSHLDR LRTILACDPK VSSLVSWTTF PLLQLQEDIT TKASLGMLTF 120 FWIFPFLDFC IDQIPTDKAS LLAKVVERMK DLKQRAEEIT EAQCFPSETD EIVVLPSSAS 180 ISGQRSVFEA SFCCEDRSDL LPELIDTLRS LRLKTLRAEI ATLGGRVRNV LILAKENEAS 240 EEEEEEEEEE EDEPGGAFLR DALQALVDRP HPAERCKRRR LKKTIMECPV DMCC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	71	ERRRRE
2	276	280	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410434.1	1e-125	PREDICTED: putative transcription factor bHLH107
TrEMBL	M0TJH4	0.0	M0TJH4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P21370_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9578	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	2e-35	bHLH family protein