PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P20510_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SBP | ||||||||
Protein Properties | Length: 341aa MW: 36746.9 Da PI: 9.4035 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.3 | 1.6e-41 | 50 | 124 | 1 | 75 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +CqvegCeadl+++k y+ rhkvC +hsk+p v+v g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk GSMUA_Achr7P20510_001 50 RCQVEGCEADLTKVKAYYCRHKVCGMHSKSPRVMVGGMEQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRK 124 6*************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.7E-34 | 43 | 112 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.821 | 48 | 125 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-39 | 49 | 129 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-32 | 51 | 124 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEMSSSSVGG SAARGSNDSL HGLTFGKKIY FEDGKGKTVL QRGQQQPPPR CQVEGCEADL 60 TKVKAYYCRH KVCGMHSKSP RVMVGGMEQR FCQQCSRFHQ LAEFDQGKRS CRRRLAGHNE 120 RRRKLPPGSF ASRHGLSFHG PSRFRNFVMD FSCPKISSTA RNVWPTARPG NQVASNQWHG 180 FVDSSSDAAA AAACSAHRYL QGSPGQILYS SPEPSLGECL GGASDASCAL SLLSSEPWGS 240 RTTRSKVPPT VSASSGFNSA SSAHSIVSAN HTAESWGLRD HGSRNSSQEL RHEAGTARVN 300 LAGGALFSGQ LELALQGNGQ CLGHGSGREY DHSDHVIHWS L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-29 | 51 | 124 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410332.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q7EXZ2 | 2e-75 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | M0TJ88 | 0.0 | M0TJ88_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P20510_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 5e-43 | squamosa promoter binding protein-like 15 |