PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P20490_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 351aa MW: 38166.6 Da PI: 8.3624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P20490_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	283	328	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +A +YIk+Lq GSMUA_Achr7P20490_001 283 SIAERVRRTRISERMKKLQELVPNM----DKQTNTADMLDLALDYIKNLQ 328 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.735	277	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-16	280	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.53E-12	281	332	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-15	282	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-9	283	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MSSGLLRYRS APSSLLGEVC EEFDPVSAAS HETETMYARF LAPDPRDEVR DKPSGVAASS 60 AGHSSPHVPP PPAAPEVNEQ QSRGFSSAPH TMFHLQQQQP QQMPSHSSVE SSFPVSGSSS 120 SLIRQSSSPA GFLSHLNANS GYGMMRGMGG FRDGSGFMMD GTHRSKGQLS FPSRQNSVLS 180 HISEMESEEA MEGSSPRERS GDGRSFISAF SVASWDESSL TSLNGQTMPQ NGEGRNHASG 240 VPHQLSLPKS SPVMTAIEKF LQIHDAVPFK IRAKRGCATH PRSIAERVRR TRISERMKKL 300 QELVPNMDKQ TNTADMLDLA LDYIKNLQKQ VKALSESRAS CSCSASTHKL Y

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MSSGLLRYRS APSSLLGEVC EEFDPVSAAS HETETMYARF LAPDPRDEVR DKPSGVAASS  60
AGHSSPHVPP PPAAPEVNEQ QSRGFSSAPH TMFHLQQQQP QQMPSHSSVE SSFPVSGSSS  120
SLIRQSSSPA GFLSHLNANS GYGMMRGMGG FRDGSGFMMD GTHRSKGQLS FPSRQNSVLS  180
HISEMESEEA MEGSSPRERS GDGRSFISAF SVASWDESSL TSLNGQTMPQ NGEGRNHASG  240
VPHQLSLPKS SPVMTAIEKF LQIHDAVPFK IRAKRGCATH PRSIAERVRR TRISERMKKL  300
QELVPNMDKQ TNTADMLDLA LDYIKNLQKQ VKALSESRAS CSCSASTHKL Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410327.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	M0TJ86	0.0	M0TJ86_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P20490_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-47	bHLH family protein