PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P20150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 412aa    MW: 44992.7 Da    PI: 4.7476
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P20150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.25.9e-07344439
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           r C+ + e++   +C+++   lC +C  ++H+       H++
  GSMUA_Achr7P20150_001  3 RLCDFCTEQRSVVYCRSDAASLCLSCDRNIHSAnalsrrHSR 44
                           68*****************************65677777776 PP
2zf-B_box23.11.5e-074689441
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                             C+++  ++++  C + +  lC++C  ++H g      H++++
  GSMUA_Achr7P20150_001 46 LLCDRCTTQPAIVRCIEENASLCQNCDWNGHGGlaltseHKRQT 89
                           57*****************************6699999999876 PP
3CCT639.1e-22355398144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Re al RYkeK+ktRkFeKkirY+sRKa+A+ R RvKGrFvk+ 
  GSMUA_Achr7P20150_001 355 RESALIRYKEKKKTRKFEKKIRYASRKARADVRRRVKGRFVKAG 398
                            99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
SMARTSM003362.0E-9147IPR000315B-box-type zinc finger
CDDcd000214.08E-7347No hitNo description
PROSITE profilePS501199.0014390IPR000315B-box-type zinc finger
CDDcd000212.95E-44790No hitNo description
SMARTSM003362.14890IPR000315B-box-type zinc finger
PfamPF062031.7E-16355397IPR010402CCT domain
PROSITE profilePS5101715.577355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGRLCDFCTE QRSVVYCRSD AASLCLSCDR NIHSANALSR RHSRTLLCDR CTTQPAIVRC  60
IEENASLCQN CDWNGHGGLA LTSEHKRQTI NCYSGCPSAA EFSRIWSFFE FPDMEEPDFE  120
KGLMTINENS VTNCWGPPED SSTANIGSTG KMNDIKAVDK ANPWVESSSA SGLNAMSCSA  180
DRPAGSMDST TPKTSCPRTD DVDFCKDDFY EGFTMGDADM TFENYEELFG ASHNLTGDLF  240
DDAGIDSFFD MKENSATNSI CHGESTEEVK QMQATCGNAV SADPAMSNPE GNADSSLALP  300
GCQVQSTLSF SFSGVTGESS AGEYQDCGMS GMLLTGEPSC YHAGPGSSSL PTSNRESALI  360
RYKEKKKTRK FEKKIRYASR KARADVRRRV KGRFVKAGEA YDYDPLSETR SC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410304.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
TrEMBLM0TJ520.0M0TJ52_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P20150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-84B-box type zinc finger protein with CCT domain