PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P19340_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21642.5 Da PI: 8.8589 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 2.9e-30 | 65 | 123 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+YYrC++a +Cpvkkkv+rsaed ++++ tYegeHnh GSMUA_Achr7P19340_001 65 VKDGYQWRKYGQKVTRDNPSPRAYYRCSFApTCPVKKKVQRSAEDRSILVATYEGEHNH 123 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-29 | 60 | 124 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.419 | 60 | 123 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-25 | 63 | 125 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-33 | 65 | 125 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-25 | 66 | 123 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSKENKMLTE MVSAMHYNYN ALCNQFFNLS NSNEDNMFKR FREDPKPKIS KIYVQTEPSD 60 SSLVVKDGYQ WRKYGQKVTR DNPSPRAYYR CSFAPTCPVK KKVQRSAEDR SILVATYEGE 120 HNHGHLSQGA GSVQSGPQPC LVSIGPSEME SPMFQRLLVE QMATSLTKDP NFTTALADAI 180 SGKMPQHPPA QN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 64 | 123 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018684183.1 | 1e-131 | PREDICTED: WRKY transcription factor WRKY76-like isoform X3 | ||||
Swissprot | Q9SAH7 | 1e-58 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | M0TIX1 | 1e-144 | M0TIX1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P19340_001 | 1e-144 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 6e-61 | WRKY DNA-binding protein 40 |