PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P19320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 153aa    MW: 17557.9 Da    PI: 8.4831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P19320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-19756255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  GSMUA_Achr7P19320_001  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMCG 56
                           8*******9.**********8.....334**********************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-32663No hitNo description
PfamPF008471.5E-11756IPR001471AP2/ERF domain
SMARTSM003808.9E-39770IPR001471AP2/ERF domain
PROSITE profilePS5103220.613764IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-20765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-33764IPR001471AP2/ERF domain
PRINTSPR003672.3E-11819IPR001471AP2/ERF domain
PRINTSPR003672.3E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MARPQKRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGARAR  60
TNFSYGPNGS LPSNCRYLSA ALTAKLHRFN LLSLQATQPA RTEFAGGKKE ETNWVVKENG  120
HGEVEFSYLE ERHIEQMIEE LLDSNLSMEL CSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-17663462ATERF1
3gcc_A7e-17663462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083551e-31AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410184.11e-106PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_018684154.11e-106PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-57ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM0TIW91e-110M0TIW9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P19320_0011e-111(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-48ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]