PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P19060_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ZF-HD

Protein Properties

Length: 206aa MW: 21868.6 Da PI: 7.8081

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P19060_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104	9.5e-33	61	115	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaACgCHRnFHR+e+e GSMUA_Achr7P19060_001 61 GVRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACGCHRNFHRKEPE 115 68************************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-24	54	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.0E-30	62	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.2E-30	63	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.016	64	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.5E-19	137	204	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-30	140	205	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.4E-25	144	199	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDFDDHDEGE EVIRMPVGSS YDSPMENSGR GGGAKMGGGE SAATMAAGGS GHRKAYGCGG 60 GVRYRECLKN HAVGIGGHAV DGCGEFMAAG EEGTLDALRC AACGCHRNFH RKEPEGGGAG 120 VGGATGGGGA MEHRPAPLAL PSTKRFRTKF TPEQKDKMLA FAERLGWRIQ KHDEAAVQEF 180 CEESCVKRHV LKVWMHNNKH TLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-29	142	201	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410127.1	1e-116	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	3e-63	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	M0TIU3	1e-148	M0TIU3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P19060_001	1e-149	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-63	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]