PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P18900_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 219aa MW: 24775 Da PI: 8.7294 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100.9 | 1.2e-31 | 1 | 85 | 9 | 102 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 ++ed+ ++++isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv ++ weF++++F++g+++ll+k GSMUA_Achr7P18900_001 1 MVEDNVTDDVISWGKTGTSFVVWKPVEFARDLLPVHFKHNNFSSFVRQLNTYGFHKVVPDR---------WEFANDNFRQGEQRLLCK 79 89*********************************************************99.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k GSMUA_Achr7P18900_001 80 IRRRKA 85 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.8E-32 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.2E-44 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.45E-29 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.8E-28 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-9 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 33 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-9 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVEDNVTDDV ISWGKTGTSF VVWKPVEFAR DLLPVHFKHN NFSSFVRQLN TYGFHKVVPD 60 RWEFANDNFR QGEQRLLCKI RRRKAALPQV PSAGKASADR NNRPPPSPLS NSGEAHSSST 120 ASLLPPSEHL LELTHENEKL RMDNQILSTE LAQAKRQYRE LLASLSNFVD VSQPNLSVLM 180 QEKSALSVSS PLLSAQHILF FPTLTLYREN SCFIVDTAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 2e-17 | 1 | 83 | 12 | 105 | Heat shock factor protein 2 |
5d8l_B | 2e-17 | 1 | 83 | 12 | 105 | Heat shock factor protein 2 |
5d8l_D | 2e-17 | 1 | 83 | 12 | 105 | Heat shock factor protein 2 |
5d8l_F | 2e-17 | 1 | 83 | 12 | 105 | Heat shock factor protein 2 |
5d8l_H | 2e-17 | 1 | 83 | 12 | 105 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410099.1 | 1e-136 | PREDICTED: heat stress transcription factor B-1-like | ||||
Refseq | XP_009410100.1 | 1e-136 | PREDICTED: heat stress transcription factor B-1-like | ||||
Refseq | XP_018684735.1 | 1e-136 | PREDICTED: heat stress transcription factor B-1-like | ||||
Swissprot | Q67TP9 | 5e-63 | HSFB1_ORYSJ; Heat stress transcription factor B-1 | ||||
TrEMBL | M0TIS7 | 1e-160 | M0TIS7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P18900_001 | 1e-161 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-46 | heat shock factor 4 |
Publications ? help Back to Top | |||
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