PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 449aa    MW: 49651.9 Da    PI: 5.2765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30229288159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  GSMUA_Achr7P18820_001 229 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 288
                            58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-32214290IPR003657WRKY domain
SuperFamilySSF1182902.35E-27223290IPR003657WRKY domain
PROSITE profilePS5081128.529224290IPR003657WRKY domain
SMARTSM007741.4E-37229289IPR003657WRKY domain
PfamPF031067.4E-27230288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSSEKREERI MHIDLSLEPA EDEERTLEVG REDGDQQQEG KEEEEGEDKQ ESSNHEEDQE  60
EEKDQSHEKP MKDELCMLQA EMNRMKEENK LLRNVIDRTW KDYHELQMQF AGMQQQDRHP  120
KERQVSNSLG EERLLERKKP GESKEIKEQP SMVADDKELG LSLTLQTYSD PHEREDASFE  180
EKGKCLRSCQ PLDAKLQTGQ LSMTTSQSIN PANRKTRVSV RARCQGPTMN DGCQWRKYGQ  240
KVAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILVTT YEGTHNHPLP VGATALASTA  300
TAASNFTLLN ETNSSSSIPN HPPLSYLSPF LASPSPHLPT TNSFASFFGA ASSNGHGQQQ  360
LGLLGPMNPW AVSSSNSAIV SGSSWLSSKG VWNSEDGKYS AEKSSATAAD PKLTVTVAAA  420
ISGATLAGKD GESSSRVSNH WVLESASPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-222292901777Probable WRKY transcription factor 4
2lex_A9e-222292901777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410091.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLM0TIR90.0M0TIR9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-63WRKY DNA-binding protein 9