PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P18820_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 449aa MW: 49651.9 Da PI: 5.2765 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 229 | 288 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ GSMUA_Achr7P18820_001 229 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 288 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-32 | 214 | 290 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-27 | 223 | 290 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.529 | 224 | 290 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 229 | 289 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-27 | 230 | 288 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MSSEKREERI MHIDLSLEPA EDEERTLEVG REDGDQQQEG KEEEEGEDKQ ESSNHEEDQE 60 EEKDQSHEKP MKDELCMLQA EMNRMKEENK LLRNVIDRTW KDYHELQMQF AGMQQQDRHP 120 KERQVSNSLG EERLLERKKP GESKEIKEQP SMVADDKELG LSLTLQTYSD PHEREDASFE 180 EKGKCLRSCQ PLDAKLQTGQ LSMTTSQSIN PANRKTRVSV RARCQGPTMN DGCQWRKYGQ 240 KVAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILVTT YEGTHNHPLP VGATALASTA 300 TAASNFTLLN ETNSSSSIPN HPPLSYLSPF LASPSPHLPT TNSFASFFGA ASSNGHGQQQ 360 LGLLGPMNPW AVSSSNSAIV SGSSWLSSKG VWNSEDGKYS AEKSSATAAD PKLTVTVAAA 420 ISGATLAGKD GESSSRVSNH WVLESASPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-22 | 229 | 290 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-22 | 229 | 290 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410091.1 | 0.0 | PREDICTED: probable WRKY transcription factor 9 | ||||
TrEMBL | M0TIR9 | 0.0 | M0TIR9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P18820_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8022 | 34 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 6e-63 | WRKY DNA-binding protein 9 |