PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 379aa    MW: 41499.3 Da    PI: 7.2002
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.12e-092365339
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           +r C+ +++ +++++C  ++ +lC++C ++ H+       H++
  GSMUA_Achr7P18710_001 23 ARACDGCGRRRARWYCAADDAFLCQNCDSSVHSAnplarrHNR 65
                           578*****************************65777777876 PP
2CCT66.95.5e-23329372144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R+a+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  GSMUA_Achr7P18710_001 329 RQARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 372
                            99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-122168IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9932168IPR000315B-box-type zinc finger
PfamPF006439.8E-82366IPR000315B-box-type zinc finger
CDDcd000212.37E-102468No hitNo description
PROSITE profilePS5101715.914329371IPR010402CCT domain
PfamPF062031.7E-17329371IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSLFEKQRPA AVAASSAVAG KTARACDGCG RRRARWYCAA DDAFLCQNCD SSVHSANPLA  60
RRHNRIRLKT ATSSGAPDVD SDDSAPSWLR GFKRKARTPR PHQHAKTASE ARTAHPTTVP  120
ELVETSLDET EDEEQQLIYC VPVFDPAFAE FRSPPPLDDS NAPSGNEAKP TMDLQECTPA  180
STPTINTANR LTAFLPSDME IAEFAANMES LLGGGLDVSD GSFSMEKLGL VNSIEDGVNY  240
CLGDAGRLKT EQPDDTQQVT QKARLSLDYE AVIIAWSSHG SSPWTDGERP QINLDSCWHD  300
CTGMWVEGAD ALGVGHGSDT GGGYADVGRQ ARVTRYREKR RTRLFAKKIR YEVRKLNAEK  360
RPRMKGRFVK RAPGPAFAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339355RRTRLFAKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410076.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLM0TIQ80.0M0TIQ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-47B-box type zinc finger protein with CCT domain