PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 308aa    MW: 34651.5 Da    PI: 7.9295
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.84.1e-5781341128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee++++yL +kv +k++++ +++ evd++k+ePwdLp+k++ +ekewyfF++rd+ky+tg r+nrat++gyWkatgk
  GSMUA_Achr7P18330_001   8 LPPGFRFHPTDEEIITHYLSPKVINKSFSA-RAMGEVDLNKCEPWDLPTKARMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGK 94 
                            79**************************99.89***************999999********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dke+++++ elvg+kktLvfy+grapkg+kt+Wvmhe+rl
  GSMUA_Achr7P18330_001  95 DKEIYKERVELVGMKKTLVFYRGRAPKGQKTNWVMHEFRL 134
                            **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-635159IPR003441NAC domain
PROSITE profilePS5100558.6668159IPR003441NAC domain
PfamPF023652.0E-299134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEDDCMGLPP GFRFHPTDEE IITHYLSPKV INKSFSARAM GEVDLNKCEP WDLPTKARMG  60
EKEWYFFCQR DRKYPTGMRT NRATEAGYWK ATGKDKEIYK ERVELVGMKK TLVFYRGRAP  120
KGQKTNWVMH EFRLDGKFPF PNIPKSAKAE WVVCKVFHKK MGTKSSIPPP ESQGANSLAE  180
GFFDSATTLP PLMDPPYPKT NAIPTFSAMM GMEDGQVMNQ LVISNPPQNS ASHPHLLPQS  240
SYYLHQQEAM LRALAAVNDA SSSCPSQDTD HSTGRTTEIS SMASARFGDF LHPSSGPVMD  300
LDSIWDLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52616015166NO APICAL MERISTEM PROTEIN
1ut4_B3e-52616015166NO APICAL MERISTEM PROTEIN
1ut7_A3e-52616015166NO APICAL MERISTEM PROTEIN
1ut7_B3e-52616015166NO APICAL MERISTEM PROTEIN
3swm_A3e-52616018169NAC domain-containing protein 19
3swm_B3e-52616018169NAC domain-containing protein 19
3swm_C3e-52616018169NAC domain-containing protein 19
3swm_D3e-52616018169NAC domain-containing protein 19
3swp_A3e-52616018169NAC domain-containing protein 19
3swp_B3e-52616018169NAC domain-containing protein 19
3swp_C3e-52616018169NAC domain-containing protein 19
3swp_D3e-52616018169NAC domain-containing protein 19
4dul_A3e-52616015166NAC domain-containing protein 19
4dul_B3e-52616015166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410040.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ25e-98NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0TIM00.0M0TIM0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-100NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]