PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P18200_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27194.1 Da PI: 8.6018 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv v+++G ++W+ a+ g++Rt+k+c++rw +yl GSMUA_Achr7P18200_001 8 KGPWTEQEDLQLVWFVRLFGERRWDILAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T++E+ l +d+++++G++ W++Iar+++ gRt++++k++w++++ GSMUA_Achr7P18200_001 61 RGRLTPQEERLVLDLHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.35 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.39E-28 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-19 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.23E-10 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 27.003 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.17E-12 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEATQPRKGP WTEQEDLQLV WFVRLFGERR WDILAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGRLTPQEER LVLDLHAKWG NRWSRIARRL PGRTDNEIKN YWRTHMRRKA QERNRSACPS 120 PSSSSVDGPQ LGIEKPGGGS VAGGNSLISG LGVNDEVAKG YTMDQIWNEI AASASASGLS 180 FEEEQDCPPM PCSMWGVDDE DTRMLNPMPL LAFPYQSSIV ESQSPLLCCL HISKLVLLLL 240 H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-28 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-28 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410020.1 | 1e-158 | PREDICTED: myb-related protein MYBAS1-like | ||||
Swissprot | Q53NK6 | 5e-76 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | M0TIK7 | 1e-177 | M0TIK7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P18200_001 | 1e-178 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-71 | myb domain protein 59 |
Publications ? help Back to Top | |||
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