PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 270aa    MW: 29842.5 Da    PI: 7.9136
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ lv +++q+G+g+Wk++++  g+ R+ k+c++rw +yl
  GSMUA_Achr7P18080_001 14 KGPWTPEEDLMLVSYIQQHGPGNWKAVPANTGLLRCSKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding51.13.2e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T++E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GSMUA_Achr7P18080_001  67 RGNFTEQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNFWNTHL 112
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.436961IPR017930Myb domain
SuperFamilySSF466891.31E-3011108IPR009057Homeodomain-like
SMARTSM007176.6E-151363IPR001005SANT/Myb domain
PfamPF002497.7E-171461IPR001005SANT/Myb domain
CDDcd001672.30E-121661No hitNo description
PROSITE profilePS5129424.73862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2565117IPR009057Homeodomain-like
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
CDDcd001672.00E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDLMLVSYIQ QHGPGNWKAV PANTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNFWNT HLKKKLKKMQ  120
NFEDDTNKFG LSIHQPISKG HYHGDLRPSV GYCSSTNAGP QVPSATYASS TENISRMLEG  180
WMKNSPKKRT SPSNSDSSQR STNHPAATES ASSEESAAVS DASLFQGESK PDVETPMPLA  240
LLETWLFDES IGQGGAALAD MPFDDTAGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-27141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410003.10.0PREDICTED: myb-related protein 306-like
SwissprotP813922e-96MYB06_ANTMA; Myb-related protein 306
TrEMBLM0TIJ50.0M0TIJ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-88myb domain protein 60
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]