PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P17990_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 336aa MW: 35791.5 Da PI: 9.1076

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P17990_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	57	184	1	105
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 +a+k+++++++hTkv+gR+RR+R++ +caar+F+L++eLG+++d++tieWLlqqa+pa++++tg+++++a+++ s + s+s+ s GSMUA_Achr7P17990_001 57 PAPKRSSTKDRHTKVDGRGRRIRMPTLCAARVFQLTRELGHKSDGQTIEWLLQQAEPAVIAATGSGTIPANFTsLGISLRRSGSSIST 144 589**************************************************************99999888644555555552222 PP TCP 88 g.................................kaaksaakskksqksaa 105 + + ++s++ GSMUA_Achr7P17990_001 145 PpdfnttttpltdqriwdyvgssdfssdwrssssS-----------SSSSS 184 25555666777777777777765544444443221...........11122 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.2E-37	63	222	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.087	64	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MEGDAGGPRR PNFPLQLLEK KEANSYSTSG YASFAISPNP AAGGSGHELV ADLPRKPAPK 60 RSSTKDRHTK VDGRGRRIRM PTLCAARVFQ LTRELGHKSD GQTIEWLLQQ AEPAVIAATG 120 SGTIPANFTS LGISLRRSGS SISTPPDFNT TTTPLTDQRI WDYVGSSDFS SDWRSSSSSS 180 SSSSVLLNFN SGSVGLHASS DANNENITKR WWESEFHHQQ QHQMEEHNQA SHGRIPGTVW 240 MVTNPNTQGM VGGGGSDSEP IWAFPQVGSS TMFRGPGSSG LHFMKAPTSM ALLPSRELGL 300 HPGGSGGGEG HMGIVAAPDS TSRPPNTSQA MRSGPQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409995.1	0.0	PREDICTED: transcription factor TCP15
TrEMBL	M0TII6	0.0	M0TII6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P17990_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	6e-48	TCP family protein