PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P17910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 162aa    MW: 18466.8 Da    PI: 8.8859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P17910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-163375248
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                            y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++ 
  GSMUA_Achr7P17910_001 33 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDL 75
                           588******.**********865...5******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-183291IPR016177DNA-binding domain
PROSITE profilePS5103220.2973391IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-243390IPR001471AP2/ERF domain
SMARTSM003801.5E-233397IPR001471AP2/ERF domain
PfamPF008477.4E-93475IPR001471AP2/ERF domain
CDDcd000181.21E-223490No hitNo description
PRINTSPR003676.7E-93445IPR001471AP2/ERF domain
PRINTSPR003676.7E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MLQVLLRRNE IMADRPLVIE HRHRRRRSRA SSEYLGVRRR PWGRYAAEIR NPYTKERHWL  60
GTFDTAEEAA VAYDLSSISF SGLAGARTNF YYPFLAPPNM PSPPPPPPPP PPPPPPPSPT  120
SEQRDDLHLE FDSVQDDESM TIAAILQSFR HSSSLSSSSF LW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1532901371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409987.11e-113PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLM0TIH81e-112M0TIH8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P17910_0011e-113(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.11e-28ERF family protein