PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P16370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 292aa    MW: 31160.3 Da    PI: 5.7348
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P16370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.5e-071756437
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                           + C+ + + ++ l+C+ +  +lC+ C  + H g       H
  GSMUA_Achr7P16370_001 17 KPCDSCRSTPALLYCRADAAYLCRGCDGQVH-GanglassH 56
                           57*************************9999.435566566 PP
2zf-B_box25.23.5e-0858103241
               zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                            +++ C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  GSMUA_Achr7P16370_001  58 RAWLCEVCENAPAAVTCKADAAALCAACDADIHSAnplarrHERLP 103
                            5789*****************************6688888898877 PP
3CCT66.48.1e-23217260144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea+l+RY+eKrk R+FeK+irY+sRKa+Ae RpR+KGrF+k+ 
  GSMUA_Achr7P16370_001 217 REARLMRYREKRKCRRFEKTIRYASRKAYAEARPRIKGRFAKRV 260
                            9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.8E-111461IPR000315B-box-type zinc finger
PROSITE profilePS501199.6981461IPR000315B-box-type zinc finger
CDDcd000212.11E-71861No hitNo description
PfamPF006433.4E-51856IPR000315B-box-type zinc finger
PROSITE profilePS5011910.89357104IPR000315B-box-type zinc finger
PfamPF006431.6E-658104IPR000315B-box-type zinc finger
SMARTSM003364.1E-1062104IPR000315B-box-type zinc finger
PfamPF062031.2E-16217259IPR010402CCT domain
PROSITE profilePS5101716.579217259IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAGEVKKKGA SLGVASKPCD SCRSTPALLY CRADAAYLCR GCDGQVHGAN GLASSHERAW  60
LCEVCENAPA AVTCKADAAA LCAACDADIH SANPLARRHE RLPLLPFLAE AASSLLPQEA  120
PVLRSAAEFF FSDADAYLDL DYGLPLDAIK TVAEPDPPSL LASDGGYFDL NIAGSKPESD  180
QSLCHSVSSS EAALVPEVSQ ASVVGIPCDP AAAQADREAR LMRYREKRKC RRFEKTIRYA  240
SRKAYAEARP RIKGRFAKRV EVEAEVGRIY SSAAEAVAAL MAEDDYGVVP SF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1530492e-56DQ153049.1 Musa AAB Group CONSTANT-like protein (CO1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409763.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK532e-72COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLM0TI240.0M0TI24_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P16370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.13e-55CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]