PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P16060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 236aa    MW: 27796.8 Da    PI: 7.0722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P16060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18755254
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                           +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  GSMUA_Achr7P16060_001  7 RYRGVRQRH-WGSWVSEIRHP-----LlkARIWLGTFETAEDAARAYDEAARLMC 55
                           69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-34664No hitNo description
Gene3DG3DSA:3.30.730.109.6E-34764IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21765IPR016177DNA-binding domain
PfamPF008473.1E-11756IPR001471AP2/ERF domain
SMARTSM003805.5E-39770IPR001471AP2/ERF domain
PROSITE profilePS5103221.206764IPR001471AP2/ERF domain
PRINTSPR003676.4E-11819IPR001471AP2/ERF domain
PRINTSPR003676.4E-113046IPR001471AP2/ERF domain
PfamPF035561.2E-11153230IPR005176Potentiating neddylation domain
PROSITE profilePS512299.153158232IPR005176Potentiating neddylation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRPQQRYRG VRQRHWGSWV SEIRHPLLKA RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPFNPTCG PSSKPNYLSA ALTAKLHRYN LASHQAPQPQ QNKLAVAVQQ QQVESGWIMK  120
DEVELSYLEE HHIEQMIEEL LDSNLCMELC YTALKNRSAC ELLDLILGFQ FWPQVDKFVK  180
YLKYQLDYSV INLDQRTSFL RFCKEMNFPY LNNYDAELAW PLILDNFVEW IREKQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18670469ATERF1
3gcc_A2e-18670469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409790.11e-106PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW58e-55ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM0THZ31e-177M0THZ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P16060_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]