PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P16000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 260aa    MW: 29954.1 Da    PI: 4.5143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P16000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.7e-145398555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           + ++Er+RR+++N+++  Lr+++P+      +K++Ka+i + A++YI++Lq
  GSMUA_Achr7P16000_001 53 NIAMERNRRKKLNEKLYALRSVVPNI-----TKMDKASIIKDAIDYIQQLQ 98
                           6789*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1946114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.2764897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-1551102No hitNo description
PfamPF000104.1E-125298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1854114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDDMEAEYSH YWETKRFIDA EEFESWGFEE AISGGYYDSS SPEGTTSSAT VKNIAMERNR  60
RKKLNEKLYA LRSVVPNITK MDKASIIKDA IDYIQQLQEQ ERKMMAEMSE LEPLREEKMS  120
MGDFEYDVVP FMQQRKKKRT PRSSSAPGSP TSLPIEVLEL RVNEMGEKTM VVSITCNKKR  180
DTMIKVCELF EFLNLKVITA NITSVSENLL HTLFVETDEM DSAQLKEKIE VAIAELDVPK  240
SPISYVTYQQ EGFDEAIFLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409750.10.0PREDICTED: transcription factor bHLH35
SwissprotQ2HIV91e-79BH035_ARATH; Transcription factor bHLH35
TrEMBLM0THY70.0M0THY7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P16000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-82bHLH family protein