PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P15930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 282aa    MW: 30553.8 Da    PI: 10.2516
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P15930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31206263359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+
  GSMUA_Achr7P15930_001 206 DEYSWRKYGQKPIKGSPYPRGYYKCSTLrGCPARKHVERAPDDPTMLIVTYEGEHRHT 263
                            9************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-19153202IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-32192263IPR003657WRKY domain
PROSITE profilePS5081130.274199265IPR003657WRKY domain
SuperFamilySSF1182901.7E-26202263IPR003657WRKY domain
SMARTSM007744.6E-37204264IPR003657WRKY domain
PfamPF031061.0E-26206262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAVDLMGYAK MDDQIAIQEA AAAGIRSMEH LISRLSQQQQ LDCRDITDHA VSKFKKVISI  60
LNRTGHARFR RSPTAPPPAE PSPPHHPLPP PSRPLTLDFT EPPMSSATSS FMSSVTGDGS  120
VSNGRPGASS FLLPPPAAAV SAGKPPFSST ISRRCHEHGH TNSEHVAGKY AIPGSRCHCS  180
KRRKSRVKRT IRVPAISSKL ADIPPDEYSW RKYGQKPIKG SPYPRGYYKC STLRGCPARK  240
HVERAPDDPT MLIVTYEGEH RHTPSAATVA APEPVTASAS AI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22192262271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409742.11e-170PREDICTED: WRKY transcription factor WRKY51-like
SwissprotQ6IEN11e-105WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLM0THY00.0M0THY0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P15930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.15e-67WRKY DNA-binding protein 17