PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P15080_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GRAS | ||||||||
Protein Properties | Length: 598aa MW: 67391.1 Da PI: 6.4405 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 229.1 | 2e-70 | 305 | 523 | 1 | 221 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++lL+ cA+av+ +d + a++lL+++++++sp+gd qRla++f+ +L+arla+++s++y+al +++t+ ++ l+a++l+ ++ GSMUA_Achr7P15080_001 305 LRTLLILCAQAVAVDDRRTANELLKQIRQHSSPNGDGSQRLAHCFADGLEARLAGMGSQIYQALVAKRTT---ATDILKAYHLYLAAC 389 5789*************************************************************99999...9************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P+ ++sh+ Nq+Il+ +e++++vHiiDf+i G+QWp+L+q La+R++gpp+lRiTg++ p++g +e++eetg+rLa +A+ ++v GSMUA_Achr7P15080_001 390 PFKRISHFFSNQTILNLAEKASKVHIIDFGIYFGFQWPCLIQRLATREGGPPKLRITGIDVPQPGfrPTERIEETGQRLAAYAKGFNV 477 ****************************************************************9*********************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221 pfe+++ +a+++e++++e+L++ ++E+++Vn+ ++ +l de+v ++ GSMUA_Achr7P15080_001 478 PFEYQA-IASKWESIRVEDLHIAKDEVVVVNCLYRFRNLIDETVIVD 523 ******.7********************************9998665 PP | |||||||
2 | GRAS | 50.9 | 2.9e-16 | 523 | 594 | 303 | 374 |
GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++r+er et+++W+ r +aGF ++pl+ +++k+a+ ++ ++ + + ++e+s +l++gWk+r +++SaW+ GSMUA_Achr7P15080_001 523 DKRVERPETYKQWQVRNLRAGFVQLPLDPDIMKKANDKVKSCYHKDFVIDEDSRWLIQGWKGRITYAISAWK 594 579****************************************889*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.194 | 279 | 598 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.0E-68 | 305 | 523 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MVMDSGLREL SGMMSGLSYD DFYSDQNIFR AIGLGESQPF LGHVNYVDLA QMSSLTNQSS 60 YPTSISTSVE GDNPEDSDIF YSDIALNYIS RMLLEEDIDE KVSTYKEDSA LRAAVKPFYD 120 ILGQKYPPSP DRPLRVADNS SVCDSSDYQQ SLTCPGSVDY SPQTPSSSYN SISSIEEPFN 180 NVTISPNLFF GSMPTWHFKR GVEEARKFLP SNDKLFINLE SNGDLDLTEG RNNKQSAVSS 240 DGEVRSEMFD MVLLYQGDKC SKKMSDLREA MQNEASKSAQ NVPTKGSSGG KTRRKKQTKK 300 EVVDLRTLLI LCAQAVAVDD RRTANELLKQ IRQHSSPNGD GSQRLAHCFA DGLEARLAGM 360 GSQIYQALVA KRTTATDILK AYHLYLAACP FKRISHFFSN QTILNLAEKA SKVHIIDFGI 420 YFGFQWPCLI QRLATREGGP PKLRITGIDV PQPGFRPTER IEETGQRLAA YAKGFNVPFE 480 YQAIASKWES IRVEDLHIAK DEVVVVNCLY RFRNLIDETV IVDKRVERPE TYKQWQVRNL 540 RAGFVQLPLD PDIMKKANDK VKSCYHKDFV IDEDSRWLIQ GWKGRITYAI SAWKPTEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-34 | 312 | 509 | 26 | 220 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409514.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-124 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | M0THP5 | 0.0 | M0THP5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P15080_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-121 | GRAS family protein |