PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P15060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 262aa    MW: 29073.6 Da    PI: 5.7747
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P15060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-3286142258
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                            dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers edp+++++tYeg H h
  GSMUA_Achr7P15060_001  86 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSLEDPETLIVTYEGLHLH 142
                            8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.61180145IPR003657WRKY domain
SuperFamilySSF1182904.05E-2782143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-3082143IPR003657WRKY domain
SMARTSM007741.5E-3785144IPR003657WRKY domain
PfamPF031066.8E-2686142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRELLEEEDD DETSATFISH ESSIVNKLIS TVYSGPTIRD VESALSTTLG AGDSSCRCSE  60
SEPDSVSHMD SKYTLRMKIC GNGVADDGYK WRKYGQKSIK NSPNPRSYYR CTNPRCNAKK  120
QVERSLEDPE TLIVTYEGLH LHYTSHFLLP RPQDLFTAAC HAAKKPKLQS TDLHAEVPDC  180
VPPEPTVHSP SILRHGLDED VMQRSQGLLE DIVPLLVRKP CNSTIYSYGN NLLSHESPPS  240
SSTISWSPSS PCLDVGIFSS IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-21861421874Probable WRKY transcription factor 4
2ayd_A5e-21841421371WRKY transcription factor 1
2lex_A5e-21861421874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260531e-100AC226053.1 Musa balbisiana clone BAC MBP-6L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409511.11e-158PREDICTED: probable WRKY transcription factor 49
TrEMBLM0THP30.0M0THP3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P15060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.16e-47WRKY DNA-binding protein 49