PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P14890_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 222aa MW: 24672.5 Da PI: 8.4974 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 66 | 110 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + +++G+g+W+ I+r + +Rt+ q+ s+ qky GSMUA_Achr7P14890_001 66 PWTEDEHKLFLLGLRKYGKGDWRNISRNFVITRTPTQVASHAQKY 110 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 57 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.995 | 59 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.82E-17 | 61 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 62 | 113 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.7E-12 | 63 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.73E-11 | 66 | 111 | No hit | No description |
Pfam | PF00249 | 2.6E-12 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MMTRPWMDVL PGKEAAPPHS YCTNWFVGQQ SSEGRSASGS WSQEENKWFE DALAKSSDHE 60 RKKGVPWTED EHKLFLLGLR KYGKGDWRNI SRNFVITRTP TQVASHAQKY FIRLNSGSKD 120 KRRSSIHDIT SVDFPDNRPP SPSSQPSTIT TQSSLALTPS LSGQFSAIAD PDQLGEVASG 180 FSPSSHGHRF MQCQFGTNPF GMNLLAQNPE TGKCDQVNLG IL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226034 | 0.0 | AC226034.1 Musa acuminata clone BAC MA4-18J6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409493.1 | 1e-112 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-50 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M0THM6 | 1e-165 | M0THM6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P14890_001 | 1e-166 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-45 | MYB family protein |
Publications ? help Back to Top | |||
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