PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P14640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 484aa    MW: 53127.1 Da    PI: 5.655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P14640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12294340455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N +f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_Achr7P14640_001 294 NHVEAERQRREKLNRRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 340
                            799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4249207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.768290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-15293344No hitNo description
SuperFamilySSF474598.37E-19293357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10294340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17294352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-16296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSEFSWSEEE RRMAAAVLGP EAFGYLAASR ASSDGLTAAA FSSSAEADLQ RRLLDLVEGP  60
RDRPGLGWNY AIFWQISRAK SGDLVLGWGD GSCRDPRDGA EAAAAAAAAA DNYALRLDQV  120
TDAEMFFLVS MYFSFPRGKG APGRALAAGK HLWILSPSDY CYRGFLAASA GFRTIVVVPF  180
ETGVLELGSV RSLTESPDAL QTIKSVFLED NSWDTQLKSG SRSWMLFPNV RKGMQSFSWN  240
HVRGLNSHQQ QFGNGLIIDF SVGGTSRAGA LIAHIGALEG DHADPANGRE EPLNHVEAER  300
QRREKLNRRF YALRAVVPNI SKMDKASLLG DAIAYITDLQ KRLKEMESER EMFLESGMVD  360
PSTRVCCPEF DVQAQQDEVI VQVSSPLNTH PVSKVFQALK EAEIDVAESK VSGGEDTIQH  420
TFIIKSPGSE QQTKDKICKS VPNKGAELWC SIIINAIIIH LKNLFLSGAF DISIECLSHV  480
IHFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28288350264Transcription factor MYC2
5gnj_B2e-28288350264Transcription factor MYC2
5gnj_E2e-28288350264Transcription factor MYC2
5gnj_F2e-28288350264Transcription factor MYC2
5gnj_G2e-28288350264Transcription factor MYC2
5gnj_I2e-28288350264Transcription factor MYC2
5gnj_M2e-28288350264Transcription factor MYC2
5gnj_N2e-28288350264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2628850.0KR262885.1 Musa ABB Group cultivar Monthan ABA inducible bHLH TF-like protein gene, partial cds.
GenBankKR2628860.0KR262886.1 Musa AAB Group cultivar Nendran ABA inducible bHLH TF-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409474.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotA0A3Q7ELQ21e-104MTB1_SOLLC; Transcription factor MTB1
TrEMBLM0THK10.0M0THK1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P14640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.18e-80bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]