PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P14300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 311aa    MW: 34292.2 Da    PI: 10.5453
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P14300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-31148206259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp +++itY+ eHnh+
  GSMUA_Achr7P14300_001 148 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRTDPGMFIITYTAEHNHP 206
                            79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-31133208IPR003657WRKY domain
PROSITE profilePS5081134.004142208IPR003657WRKY domain
SuperFamilySSF1182901.57E-26143208IPR003657WRKY domain
SMARTSM007741.1E-37147207IPR003657WRKY domain
PfamPF031061.5E-25149206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MADDDWDLGA VVRSCRPSGA AAAPRQPFSS FPPPTVPLEA GEEAEGVKDG SFVGFPDLFR  60
SSDGLQELEE LCKPFVPKVR QQPQQLARAS PSSASPASAA SAVALPRPHQ PPPSRQHHRP  120
APQIARSKRR KNQQKKVVCH VPAAGLSSDV WAWRKYGQKP IKGSPYPRGY YRCSSSKGCL  180
ARKQVERSRT DPGMFIITYT AEHNHPPPPP PIPRRRQRRS SAMTASWETT SSNRHGCLKV  240
TTRPPQLVAA DATSSFSFFF SLTVHCTENY EEKILVSFPS LSLSLSLSVK STERGSVILL  300
NRFLFLLLLL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-22135208679Disease resistance protein RRS1
5w3x_D7e-22135208679Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132ARSKRRKNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409443.11e-149PREDICTED: WRKY transcription factor 22-like
TrEMBLM0THG70.0M0THG7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P14300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-44WRKY family protein