PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P14140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 360aa    MW: 39996.5 Da    PI: 6.2725
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P14140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.6e-28136195258
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                            +Dgy+WrKYGqKe+ g+++pr+YYrC+++   gC ++k+v+rs++dp v++itY+geH++
  GSMUA_Achr7P14140_001 136 EDGYSWRKYGQKEILGARHPRGYYRCSHRnsvGCLATKQVQRSDQDPCVFDITYRGEHTC 195
                            8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-27123196IPR003657WRKY domain
PROSITE profilePS5081123.02130193IPR003657WRKY domain
SMARTSM007742.6E-40135197IPR003657WRKY domain
SuperFamilySSF1182904.05E-24135195IPR003657WRKY domain
PfamPF031061.9E-26136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MESTGAWDLS SLLRLLAQGE EQARQLEAHL EAPSLAEHCK SLLQRVRSTL EEAISMAKLV  60
DYEMSRQPAC HNAIAEAAAA AASDSPRSNS GSPRSESSER VFKEHERMEM CKKRKTLPKW  120
TNQVRVSSGG VTEGLEDGYS WRKYGQKEIL GARHPRGYYR CSHRNSVGCL ATKQVQRSDQ  180
DPCVFDITYR GEHTCLQRPQ PSPLPEPELR QSHENPPTIH EALLHHPRQH LQSSLRVETE  240
GLNMHDQVLS SSFSFPSTPL DSFGPQSRVF SSTNPLENTY VGSFSPFISP TTSESNYFSV  300
SPCQMSGYGG GIAPNTSESD LTEIISAATS TTNSPKLDAA FMLDHAEFDQ IFPFDAPKFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20131195468OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409425.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLM0THF10.0M0THF1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P14140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-40WRKY family protein