PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P13980_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 368aa MW: 40029.6 Da PI: 8.0732 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.8 | 5.7e-36 | 53 | 140 | 2 | 75 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..ea 75 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ + +++s+c + GSMUA_Achr7P13980_001 53 TGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDKLAELppwtpsaskltaPHTASSSCrpPP 140 79**************************************************************885555554444222223333211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.5E-32 | 53 | 133 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.242 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MGKGHSHHGL GYNQLSLHHH QQRPQNRSLN DWVRGGSVGE IVEVHAGHIV RSTGRKDRHS 60 KVCTAKGLRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKNAKAAI DKLAELPPWT 120 PSASKLTAPH TASSSCRPPP SDQFPSTEQN MTEFSEEPFA VGAPLLDSET LADVIKFFCP 180 MVASATTAPF ATPSIRLDSY LSDLPSRTSS QAQDLRLSLQ SFQDPVFHTL ESGHQHHHHA 240 QCLRSPNAAT SDAHFLSSAN LAFNAASVST EAFGSAVPLH SVLGQSQLFF QRGPLQSGNS 300 PVVHAREDTV DAGADHRVQT KVHPCTSPIG FTSVASFSGF HIPARIQGEE KHDSITDKPP 360 SASSAPRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-22 | 60 | 113 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-22 | 60 | 113 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409694.1 | 0.0 | PREDICTED: transcription factor PCF5-like | ||||
TrEMBL | M0THD5 | 0.0 | M0THD5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P13980_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 4e-71 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |