PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P13700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 35169.3 Da PI: 10.2998 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.3e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ede l+ v++ G g+W+t +++ g+ R++k+c++rw++yl GSMUA_Achr7P13700_001 19 RGPWTADEDEVLASFVRREGEGRWRTLPKRAGLLRCGKSCRLRWLNYL 66 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.5e-15 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr7P13700_001 72 RGPIAPDEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 117 566679****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 10 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.411 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-28 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-11 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-14 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.84E-8 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 24.198 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-24 | 69 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-10 | 77 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEGRRPTATP CCSKVGMKRG PWTADEDEVL ASFVRREGEG RWRTLPKRAG LLRCGKSCRL 60 RWLNYLRPSI KRGPIAPDEE DLILRLHRLL GNRWALIAGR IPGRTDNEIK NYWNTHLTKK 120 LIKQGIDPRT HKPLPSSTDH GSPAQLVSCH PATDRDSMPQ EMGAGSSEAI AIRNDRCGYF 180 HGLDPHHDDV AWQNCNCSKN AEKELRAVLT YRKYNTANKI VVKQTHSITT ESNLTSGHCS 240 LAQLLRRRKL QRPKGGFCLC WRMMRDDLDP LPHRRRTVRR WKDACVTRED RSPSDSWCIV 300 RVSVCYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 17 | 121 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409374.1 | 1e-143 | PREDICTED: transcription repressor MYB5-like isoform X2 | ||||
TrEMBL | M0THA7 | 0.0 | M0THA7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P13700_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 8e-81 | myb domain protein 5 |