PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P13700_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 307aa    MW: 35169.3 Da    PI: 10.2998
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P13700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-161966148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT++Ede l+  v++ G g+W+t +++ g+ R++k+c++rw++yl
  GSMUA_Achr7P13700_001 19 RGPWTADEDEVLASFVRREGEGRWRTLPKRAGLLRCGKSCRLRWLNYL 66
                           89******************************99************97 PP

2Myb_DNA-binding47.44.5e-1572117148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_Achr7P13700_001  72 RGPIAPDEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 117
                            566679****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-201068IPR009057Homeodomain-like
PROSITE profilePS5129413.4111466IPR017930Myb domain
SuperFamilySSF466894.4E-2816113IPR009057Homeodomain-like
SMARTSM007174.7E-111868IPR001005SANT/Myb domain
PfamPF002495.0E-141966IPR001005SANT/Myb domain
CDDcd001673.84E-82166No hitNo description
PROSITE profilePS5129424.19867121IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-2469122IPR009057Homeodomain-like
SMARTSM007173.5E-1471119IPR001005SANT/Myb domain
PfamPF002496.0E-1473117IPR001005SANT/Myb domain
CDDcd001672.01E-1077117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEGRRPTATP CCSKVGMKRG PWTADEDEVL ASFVRREGEG RWRTLPKRAG LLRCGKSCRL  60
RWLNYLRPSI KRGPIAPDEE DLILRLHRLL GNRWALIAGR IPGRTDNEIK NYWNTHLTKK  120
LIKQGIDPRT HKPLPSSTDH GSPAQLVSCH PATDRDSMPQ EMGAGSSEAI AIRNDRCGYF  180
HGLDPHHDDV AWQNCNCSKN AEKELRAVLT YRKYNTANKI VVKQTHSITT ESNLTSGHCS  240
LAQLLRRRKL QRPKGGFCLC WRMMRDDLDP LPHRRRTVRR WKDACVTRED RSPSDSWCIV  300
RVSVCYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24171215108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409374.11e-143PREDICTED: transcription repressor MYB5-like isoform X2
TrEMBLM0THA70.0M0THA7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P13700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-81myb domain protein 5