PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P13400_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 401aa    MW: 43495.7 Da    PI: 8.703
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P13400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-3096155159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r++ed +++++tYeg+Hnh+
  GSMUA_Achr7P13400_001  96 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApACPVRKQVQRCQEDMSILITTYEGTHNHP 155
                            58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3181157IPR003657WRKY domain
SuperFamilySSF1182908.37E-2790157IPR003657WRKY domain
PROSITE profilePS5081128.20891157IPR003657WRKY domain
SMARTSM007746.6E-3696156IPR003657WRKY domain
PfamPF031061.7E-2697155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVEVREENER LKMILTQITE DYRSLSDVVR REQAKKPIKN TPADDEELKE EDTGAEPWPP  60
SKAAKSARNG DDEVSQQPLV KKARVSVRAR CDGTTMNDGC QWRKYGQKIS KGNPCPRAYY  120
RCTVAPACPV RKQVQRCQED MSILITTYEG THNHPLPISA SAMASTTAAA ASMLLSGSSA  180
SQPAVGFPGS FSTAISQQFH LPNPLISSIT SHPTITLDLT VPPSCSFQAN QFSSFSSNFT  240
TTTPRYSSTG FNISSSDTNS LPTLGRQPHD YLYRSYLQKT TKPSTPPNQH PLTDTLAKAI  300
TSDPKFHSAL AATITSYVEA RGGKEAVGHG LEWGEQHLNS LALPFPAAPQ GNGCATSSYF  360
NRLPGLNLNT QQGSLLLQSS LGFPSTKGAS ASPRDHNTKN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20961571777Probable WRKY transcription factor 4
2lex_A1e-20961571777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1462313e-31BT146231.1 Lotus japonicus clone JCVI-FLLj-21B16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409683.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotA0A3Q7GFB56e-76WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLM0TH770.0M0TH77_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P13400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-51WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]