PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P13310_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 238aa MW: 26571.9 Da PI: 9.6858 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.9 | 3.6e-32 | 162 | 220 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk++er aedp++v++tYeg+H h+ GSMUA_Achr7P13310_001 162 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRIERMAEDPRMVITTYEGRHVHS 220 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 147 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-28 | 154 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.344 | 157 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-35 | 162 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-25 | 163 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MFPSTSKGVM NQGLVENPEI MATSHMGFNL QASHLPPLTF SPYSLSKTCT VGGEDAVSRL 60 RGNLPSLPPD HGDDGSGRLG QSPTQRSSSD LWSRTGDRAA SDKGSSVAAG EYYSNNKNGP 120 AANNIIIDGL SVGAMRMKKV KVRRKVREPR FCFKTMSEVD VLDDGYKWRK YGQKVVKNTQ 180 HPRSYYRCTQ ENCRVKKRIE RMAEDPRMVI TTYEGRHVHS PSHAEEESQP SSEVTLFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-27 | 153 | 219 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-27 | 153 | 219 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 146 | KVRRKVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409340.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
TrEMBL | M0TH68 | 1e-179 | M0TH68_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P13310_001 | 1e-180 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 3e-50 | WRKY DNA-binding protein 13 |