PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P13310_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 238aa    MW: 26571.9 Da    PI: 9.6858
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P13310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.6e-32162220159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk++er aedp++v++tYeg+H h+
  GSMUA_Achr7P13310_001 162 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRIERMAEDPRMVITTYEGRHVHS 220
                            59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33147220IPR003657WRKY domain
SuperFamilySSF1182902.35E-28154221IPR003657WRKY domain
PROSITE profilePS5081129.344157222IPR003657WRKY domain
SMARTSM007741.5E-35162221IPR003657WRKY domain
PfamPF031066.7E-25163219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFPSTSKGVM NQGLVENPEI MATSHMGFNL QASHLPPLTF SPYSLSKTCT VGGEDAVSRL  60
RGNLPSLPPD HGDDGSGRLG QSPTQRSSSD LWSRTGDRAA SDKGSSVAAG EYYSNNKNGP  120
AANNIIIDGL SVGAMRMKKV KVRRKVREPR FCFKTMSEVD VLDDGYKWRK YGQKVVKNTQ  180
HPRSYYRCTQ ENCRVKKRIE RMAEDPRMVI TTYEGRHVHS PSHAEEESQP SSEVTLFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-27153219874Probable WRKY transcription factor 4
2lex_A7e-27153219874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146KVRRKVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409340.10.0PREDICTED: probable WRKY transcription factor 57
TrEMBLM0TH681e-179M0TH68_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P13310_0011e-180(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-50WRKY DNA-binding protein 13